About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_29627845_29629663_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29627845 - 29629663
Intron Length:
1819

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAATTTTA
5'SS Class:
major
3'SS Sequence:
CTTTCATCTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTTCTTTCATC
Flanking Amino Acid:
TDGNGYLDSSELENIIAQMM
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
77.3
33.8
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
79.2
0.66
0.8
73.6
30.3
Minor 5ss
44.3
-0.6
2.8
59.1
45.4
Minor BPS
70.8
0.64
1.7
81.67
33.1

Associated Gene:

Gene:
DGKB
Ensembl Gene ID:
ENSAPLG00000007337
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029921
29370929 - 29728554
357626
ENSAPLT00000048290
29370929 - 29698675
327747
ENSAPLT00000022211
29370929 - 29728554
357626
ENSAPLT00000043780
29370929 - 29698675
327747
ENSAPLT00000007622
29370929 - 29745640
374712
ENSAPLT00000042769
29381146 - 29728554
347409
ENSAPLT00000039991
29370929 - 29717062
346134