About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_29637919_29655531_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29637919 - 29655531
Intron Length:
17613

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCCTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAA
U12 Branch Point Sequence:
ATTCAATTACTT
Flanking Amino Acid:
PEGKQDILNQTIDLEGFKLF
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
89.8
22.2
Major BPS
74.2
0.6
0.9
75.7
28
Major PPT
81.6
0.71
0.7
74.4
30.8
Minor 5ss
39.1
-1.2
2.8
51.7
39.1
Minor BPS
47.5
-0.1
2
70.34
40.3

Associated Gene:

Gene:
DGKB
Ensembl Gene ID:
ENSAPLG00000007337
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039991
29370929 - 29717062
346134
ENSAPLT00000042769
29381146 - 29728554
347409