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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_29637919_29658770_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29637919 - 29658770
Intron Length:
20852

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAATTCTT
5'SS Class:
major
3'SS Sequence:
TTTCCTCCTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAA
U12 Branch Point Sequence:
ATTCAATTACTT
Flanking Amino Acid:
GVLAKYNPEGTIDLEGFKLF
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
74.6
41.7
Major BPS
74.2
0.6
0.9
75.7
28
Major PPT
81.6
0.71
0.7
74.4
30.8
Minor 5ss
39.8
-1.1
3.1
51.1
45.2
Minor BPS
47.5
-0.1
2
70.34
40.3

Associated Gene:

Gene:
DGKB
Ensembl Gene ID:
ENSAPLG00000007337
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043780
29370929 - 29698675
327747
ENSAPLT00000029921
29370929 - 29728554
357626
ENSAPLT00000022211
29370929 - 29728554
357626
ENSAPLT00000007622
29370929 - 29745640
374712
ENSAPLT00000048290
29370929 - 29698675
327747