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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2966013_2966640_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2966013 - 2966640
Intron Length:
628

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCCTG
5'SS Class:
major
3'SS Sequence:
TTTATCCAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GTTTATTTAATT
Flanking Amino Acid:
GVHLAEHSFQEDHEVIGNVI
Intron Amino Acid Position:
217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.1
65.5
45.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
71.6
0.49
1
67.3
38.1
Minor 5ss
41.6
-0.9
3.1
56.4
47.8
Minor BPS
72.9
0.8
1.4
85.65
34.4

Associated Gene:

Gene:
SEC22C
Ensembl Gene ID:
ENSAPLG00000012311
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018903
2952910 - 2968661
15752
ENSAPLT00000012818
2955489 - 2968661
13173
ENSAPLT00000039020
2953527 - 2969357
15831