Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2966707_2968460_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2966707 - 2968460

Intron Length:

1754

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGTTAA

5'SS Class:

strong_major

3'SS Sequence:

TGTCCTTTTGTAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTAAT

U12 Branch Point Sequence:

TTAATGCTAATG

Flanking Amino Acid:

FLPFLACVFQCYLYLFYSST

Intron Amino Acid Position:

239

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.92

0.8

26.2

Major BPS

87.2

0.92

0.9

87.6

25.6

Major PPT

81.5

0.71

0.8

31.6

Minor 5ss

45.6

-0.5

2.5

57.6

47.1

Minor BPS

43.3

-0.6

2.3

53.16

41.9

Associated Gene:

Gene:

SEC22C

Ensembl Gene ID:

ENSAPLG00000012311

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039020

2953527 - 2969357

15831

ENSAPLT00000018903

2952910 - 2968661

15752

ENSAPLT00000012818

2955489 - 2968661

13173