Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_29692928_29727843_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

29692928 - 29727843

Intron Length:

34916

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGCGAG

5'SS Class:

major

3'SS Sequence:

CTTATTTTAACAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTAAT

U12 Branch Point Sequence:

CTTATTTTAACA

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.1

0.66

1.1

63.2

43.4

Major BPS

94.5

1.11

0.6

92.2

14.6

Major PPT

80.6

0.69

0.9

76.8

Minor 5ss

34.3

-1.8

3.6

45.4

49.7

Minor BPS

70.6

0.64

1.3

75.15

36.6

Associated Gene:

Gene:

DGKB

Ensembl Gene ID:

ENSAPLG00000007337

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042769

29381146 - 29728554

347409

ENSAPLT00000029921

29370929 - 29728554

357626

ENSAPLT00000022211

29370929 - 29728554

357626