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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_29810247_29814398_R

Intron Information:

Intron Rank:
147669
Intron Class:
major
Intron Phase:
Intron Coordinates:
29810247 - 29814398
Intron Length:
4152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGATTG
5'SS Class:
major
3'SS Sequence:
ATTTTATTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.2
66.3
39.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
82.7
0.74
0.8
77.2
35.5
Minor 5ss
44
-0.7
2.8
56.5
47.8
Minor BPS
58.6
0.25
1.6
70.05
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026797
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037661
29809308 - 29814588
5281