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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2981746_2983418_F

Intron Information:

Intron Rank:
143574
Intron Class:
major
Intron Phase:
Intron Coordinates:
2981746 - 2983418
Intron Length:
1673

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCACA
5'SS Class:
strong_major
3'SS Sequence:
TCCTCCTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
ACTGACCCATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
71.6
40.2
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
75.7
0.58
0.7
68.8
31.6
Minor 5ss
38.3
-1.3
3.1
49.3
46.7
Minor BPS
37.3
-0.8
2
52.11
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027369
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027872
2981249 - 2983965
2717