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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2987257_2987605_F

Intron Information:

Intron Rank:
146165
Intron Class:
major
Intron Phase:
Intron Coordinates:
2987257 - 2987605
Intron Length:
349

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGTG
5'SS Class:
strong_major
3'SS Sequence:
CTGGATTCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TTTCCCTGGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
78.6
35.9
Major BPS
78.6
0.71
1
78.6
31
Major PPT
72.4
0.51
1
64.8
41.1
Minor 5ss
35.7
-1.6
3.4
48.7
47.5
Minor BPS
68.9
0.68
1.4
85.73
33.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028732
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039800
2986723 - 2992674
5952