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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_29921145_29952114_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29921145 - 29952114
Intron Length:
30970

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGACAT
5'SS Class:
strong_major
3'SS Sequence:
GCTTTACCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
CCTGCTTTACCA
Flanking Amino Acid:
QLTLLDCAYEQCNILRRWTR
Intron Amino Acid Position:
423

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
80.7
33.7
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
69.2
0.43
1
63.2
37.4
Minor 5ss
33.6
-1.9
3.2
47.4
48
Minor BPS
53.5
0.11
1.8
61.93
45.1

Associated Gene:

Gene:
AGMO
Ensembl Gene ID:
ENSAPLG00000007511
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023942
29921054 - 30064404
143351