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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_29943501_29952114_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29943501 - 29952114
Intron Length:
8614

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGACAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTACTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
TCCTCCTGAAAG
Flanking Amino Acid:
QLTLLDCAYEE*
Intron Amino Acid Position:
423

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
80.7
33.7
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
85.9
0.81
0.7
81.6
29.9
Minor 5ss
33.6
-1.9
3.2
47.4
48
Minor BPS
58.8
0.14
1.7
61.48
45.9

Associated Gene:

Gene:
AGMO
Ensembl Gene ID:
ENSAPLG00000007511
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007788
29943495 - 30064404
120910