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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_29950903_29952114_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29950903 - 29952114
Intron Length:
1212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGACAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCGGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TTTCTTCGGACA
Flanking Amino Acid:
QLTLLDCAYEETIIIGQYLK
Intron Amino Acid Position:
423

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
80.7
33.7
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
74.7
0.56
1
72.4
37.8
Minor 5ss
33.6
-1.9
3.2
47.4
48
Minor BPS
47.1
-0.2
1.7
64.89
34.8

Associated Gene:

Gene:
AGMO
Ensembl Gene ID:
ENSAPLG00000007511
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031292
29950075 - 30064404
114330