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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_29962838_29963350_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29962838 - 29963350
Intron Length:
513

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAATATA
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTCATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAA
U12 Branch Point Sequence:
TTTGCTTCATCA
Flanking Amino Acid:
RLGLPEEIPVVTGKEVPFNP
Intron Amino Acid Position:
321

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
82.2
30.3
Major BPS
75.5
0.63
1
66
40.9
Major PPT
78.4
0.64
0.9
73.2
36.4
Minor 5ss
38.8
-1.3
2.9
47.7
43.2
Minor BPS
53.7
0.11
1.9
71.17
41.5

Associated Gene:

Gene:
AGMO
Ensembl Gene ID:
ENSAPLG00000007511
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023942
29921054 - 30064404
143351
ENSAPLT00000007788
29943495 - 30064404
120910
ENSAPLT00000037986
29868903 - 30064404
195502
ENSAPLT00000032265
29838412 - 30064404
225993
ENSAPLT00000031292
29950075 - 30064404
114330