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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_29963486_29964600_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29963486 - 29964600
Intron Length:
1115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCAGTTT
5'SS Class:
major
3'SS Sequence:
TCTTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
TTTTACTAACAA
Flanking Amino Acid:
VNSFEPILLQLRPLAHIWNT
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1
69.1
38
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
96.1
1.04
0.5
95.6
14.9
Minor 5ss
35.5
-1.6
3.7
55.1
49.1
Minor BPS
48.3
-0.1
2.2
69.52
42.5

Associated Gene:

Gene:
AGMO
Ensembl Gene ID:
ENSAPLG00000007511
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031292
29950075 - 30064404
114330
ENSAPLT00000023942
29921054 - 30064404
143351
ENSAPLT00000007788
29943495 - 30064404
120910
ENSAPLT00000037986
29868903 - 30064404
195502
ENSAPLT00000032265
29838412 - 30064404
225993