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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_29966315_29980028_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29966315 - 29980028
Intron Length:
13714

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACTGT
5'SS Class:
strong_major
3'SS Sequence:
ACTTGTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TATTTTCAAACT
Flanking Amino Acid:
LLYQFWIHTEVITNIGPLEW
Intron Amino Acid Position:
205

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
72.1
40.4
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
82
0.72
0.9
73.1
41.5
Minor 5ss
44.9
-0.5
3
65
46.2
Minor BPS
52.9
0.17
2
77.11
39.5

Associated Gene:

Gene:
AGMO
Ensembl Gene ID:
ENSAPLG00000007511
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023942
29921054 - 30064404
143351
ENSAPLT00000007788
29943495 - 30064404
120910
ENSAPLT00000037986
29868903 - 30064404
195502
ENSAPLT00000032265
29838412 - 30064404
225993
ENSAPLT00000031292
29950075 - 30064404
114330