About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_29980125_29985810_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29980125 - 29985810
Intron Length:
5686

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTTAATTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTCTTTTTAATT
Flanking Amino Acid:
QSVLQKYTSWMFNLPMALFI
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1
73.2
39.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
87.3
0.84
0.8
84.9
35.2
Minor 5ss
40.1
-1.1
2.8
44.4
43.5
Minor BPS
78
0.96
1
86.64
33.8

Associated Gene:

Gene:
AGMO
Ensembl Gene ID:
ENSAPLG00000007511
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031292
29950075 - 30064404
114330
ENSAPLT00000023942
29921054 - 30064404
143351
ENSAPLT00000007788
29943495 - 30064404
120910
ENSAPLT00000037986
29868903 - 30064404
195502
ENSAPLT00000032265
29838412 - 30064404
225993