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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_29985915_30045783_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29985915 - 30045783
Intron Length:
59869

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
ATGTGTTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATTAT
U12 Branch Point Sequence:
TATGCCTCATTA
Flanking Amino Acid:
AYYWFHRISHEVNILWAAHQ
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
80.7
31.6
Major BPS
68.1
0.45
1
58.1
38.5
Major PPT
79.6
0.67
0.9
73.4
41.3
Minor 5ss
36.5
-1.5
3.6
53.2
45
Minor BPS
49.9
-0
1.9
64.71
42

Associated Gene:

Gene:
AGMO
Ensembl Gene ID:
ENSAPLG00000007511
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032265
29838412 - 30064404
225993
ENSAPLT00000031292
29950075 - 30064404
114330
ENSAPLT00000023942
29921054 - 30064404
143351
ENSAPLT00000007788
29943495 - 30064404
120910
ENSAPLT00000037986
29868903 - 30064404
195502