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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_30045936_30058230_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30045936 - 30058230
Intron Length:
12295

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
CTCTCTATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TTATTGATAACA
Flanking Amino Acid:
LSLGILSRLPDVLFRSVDLI
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
80.8
33.6
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
83.3
0.75
0.8
80.9
29.5
Minor 5ss
40.6
-1.1
2.8
47.9
41.8
Minor BPS
51.8
0.05
2.3
72.79
38.9

Associated Gene:

Gene:
AGMO
Ensembl Gene ID:
ENSAPLG00000007511
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023942
29921054 - 30064404
143351
ENSAPLT00000007788
29943495 - 30064404
120910
ENSAPLT00000037986
29868903 - 30064404
195502
ENSAPLT00000032265
29838412 - 30064404
225993
ENSAPLT00000031292
29950075 - 30064404
114330