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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_30058362_30064275_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30058362 - 30064275
Intron Length:
5914

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TTTTCTTCCATT
Flanking Amino Acid:
LEEVPDYVEKSIPFFIAFIV
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.8
72.1
31.2
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
90.7
0.92
0.7
89
27.2
Minor 5ss
26.3
-2.7
3.1
33.4
42
Minor BPS
59.7
0.39
2
83.73
37.9

Associated Gene:

Gene:
AGMO
Ensembl Gene ID:
ENSAPLG00000007511
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032265
29838412 - 30064404
225993
ENSAPLT00000031292
29950075 - 30064404
114330
ENSAPLT00000023942
29921054 - 30064404
143351
ENSAPLT00000007788
29943495 - 30064404
120910
ENSAPLT00000037986
29868903 - 30064404
195502