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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_30084769_30097188_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30084769 - 30097188
Intron Length:
12420

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGATG
5'SS Class:
major
3'SS Sequence:
TTCTTCCACAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTTCTTCCACA
Flanking Amino Acid:
AVNLDLTERQVKVWFQNRRM
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.1
66.4
44.6
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
66.1
0.36
1
67.7
31.7
Minor 5ss
34.9
-1.7
3.4
48.5
47.3
Minor BPS
61.7
0.36
2
79.34
37.2

Associated Gene:

Gene:
MEOX2
Ensembl Gene ID:
ENSAPLG00000007517
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036082
30084544 - 30152968
68425
ENSAPLT00000007797
30084544 - 30137675
53132