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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_30137171_30152871_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30137171 - 30152871
Intron Length:
15701

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTGCATAATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTGCAT
U12 Branch Point Sequence:
TCTTGCATAATA
Flanking Amino Acid:
ERGKKMRLAHAGYPNEEGMF
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.8
77.5
30.7
Major BPS
62.7
0.32
1.4
75
39.9
Major PPT
67.9
0.4
0.9
63.2
37
Minor 5ss
31.9
-2.1
3.3
40.3
40.2
Minor BPS
56.5
0.2
2
71.88
40.7

Associated Gene:

Gene:
MEOX2
Ensembl Gene ID:
ENSAPLG00000007517
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036082
30084544 - 30152968
68425