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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_30212365_30214045_F

Intron Information:

Intron Rank:
144460
Intron Class:
major
Intron Phase:
Intron Coordinates:
30212365 - 30214045
Intron Length:
1681

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGACC
5'SS Class:
strong_major
3'SS Sequence:
AACTTTTTGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
TAATTTATAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
75.6
33.8
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
72.6
0.51
1
68.6
41.3
Minor 5ss
28.1
-2.5
3
34.6
41.4
Minor BPS
63.3
0.49
1.6
78.69
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027845
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019838
30212128 - 30214570
2443