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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_30326094_30328809_R

Intron Information:

Intron Rank:
152904
Intron Class:
major
Intron Phase:
Intron Coordinates:
30326094 - 30328809
Intron Length:
2716

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
GTGCTGACTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
CATTTCTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
78
31.1
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
67.9
0.4
1
63
43
Minor 5ss
37.6
-1.4
2.8
48.3
41.8
Minor BPS
61.2
0.43
1.7
76.1
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029833
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024150
30326036 - 30334087
8052