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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_30346250_30390267_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30346250 - 30390267
Intron Length:
44018

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TTTTTCTTACAG
Flanking Amino Acid:
LVYGLLIQCKEKKKKPLETT
Intron Amino Acid Position:
378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
88.7
25.1
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
96.2
1.04
0.5
91.9
19.1
Minor 5ss
43.5
-0.7
2.6
59.2
45.4
Minor BPS
63.2
0.28
1.8
72.05
40.8

Associated Gene:

Gene:
CRPPA
Ensembl Gene ID:
ENSAPLG00000007572
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038881
30346196 - 30463383
117188