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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_30387080_30390267_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30387080 - 30390267
Intron Length:
3188

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTCAT
U12 Branch Point Sequence:
TTCTCTCTCACT
Flanking Amino Acid:
LVYGLLIQCKVFLLP*
Intron Amino Acid Position:
378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
88.7
25.1
Major BPS
72.5
0.56
1.2
75
39.9
Major PPT
78.7
0.65
0.8
70.3
36.3
Minor 5ss
43.5
-0.7
2.6
59.2
45.4
Minor BPS
56
0.27
2.1
80.09
42.2

Associated Gene:

Gene:
CRPPA
Ensembl Gene ID:
ENSAPLG00000007572
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046314
30337951 - 30463383
125433