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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_30387820_30390267_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30387820 - 30390267
Intron Length:
2448

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTAAT
5'SS Class:
strong_major
3'SS Sequence:
ACTTTTCACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
GTTTCAGTAATA
Flanking Amino Acid:
LVYGLLIQCKEKKRKNYHVE
Intron Amino Acid Position:
378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
88.7
25.1
Major BPS
80
0.75
1
78.6
31
Major PPT
74.7
0.56
0.9
69.4
35.3
Minor 5ss
43.5
-0.7
2.6
59.2
45.4
Minor BPS
54.3
0.13
2.2
73.34
38.5

Associated Gene:

Gene:
CRPPA
Ensembl Gene ID:
ENSAPLG00000007572
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036138
30387787 - 30463383
75597