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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_30389287_30390267_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30389287 - 30390267
Intron Length:
981

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCACTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTGTTTTTCACT
Flanking Amino Acid:
LVYGLLIQCKRMFQVTKVFY
Intron Amino Acid Position:
378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
88.7
25.1
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
88.5
0.87
0.7
86.6
26
Minor 5ss
43.5
-0.7
2.6
59.2
45.4
Minor BPS
65.3
0.56
1.7
82.67
39.4

Associated Gene:

Gene:
CRPPA
Ensembl Gene ID:
ENSAPLG00000007572
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035255
30388696 - 30463383
74688