About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_30390397_30393380_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30390397 - 30393380
Intron Length:
2984

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGTAAC
5'SS Class:
major
3'SS Sequence:
TGTTCCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTTTTTGAATA
Flanking Amino Acid:
PLLYPVILILVHLSISENIS
Intron Amino Acid Position:
305

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
74.1
36.5
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
86.4
0.82
0.8
80.9
31
Minor 5ss
34.8
-1.7
3
41.6
39.5
Minor BPS
70.5
0.64
1.3
79.42
30.4

Associated Gene:

Gene:
CRPPA
Ensembl Gene ID:
ENSAPLG00000007572
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035255
30388696 - 30463383
74688
ENSAPLT00000022592
30335729 - 30463383
127655
ENSAPLT00000046314
30337951 - 30463383
125433
ENSAPLT00000007861
30337935 - 30463383
125449
ENSAPLT00000038881
30346196 - 30463383
117188
ENSAPLT00000036138
30387787 - 30463383
75597