About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_30393474_30394051_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30393474 - 30394051
Intron Length:
578

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATTTTTTATAT
Flanking Amino Acid:
GECYNFLCINDKEYATEEIQ
Intron Amino Acid Position:
304

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
1
74.7
41.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
37.6
-1.4
2.8
47.1
41.6
Minor BPS
60.1
0.39
1.7
77.81
38.6

Associated Gene:

Gene:
CRPPA
Ensembl Gene ID:
ENSAPLG00000007572
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036138
30387787 - 30463383
75597
ENSAPLT00000035255
30388696 - 30463383
74688
ENSAPLT00000022592
30335729 - 30463383
127655
ENSAPLT00000046314
30337951 - 30463383
125433
ENSAPLT00000038881
30346196 - 30463383
117188