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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_30394142_30400088_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30394142 - 30400088
Intron Length:
5947

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTGATCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
TTTTTCTGATCA
Flanking Amino Acid:
LHESLKSQVKVEAISISLRK
Intron Amino Acid Position:
274

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83.5
27.8
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
80.9
0.7
0.9
82.2
34.2
Minor 5ss
37.7
-1.4
2.7
44.2
37
Minor BPS
65.4
0.48
1.7
79.93
36

Associated Gene:

Gene:
CRPPA
Ensembl Gene ID:
ENSAPLG00000007572
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036138
30387787 - 30463383
75597
ENSAPLT00000035255
30388696 - 30463383
74688
ENSAPLT00000022592
30335729 - 30463383
127655
ENSAPLT00000046314
30337951 - 30463383
125433
ENSAPLT00000038881
30346196 - 30463383
117188