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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_30400187_30412483_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30400187 - 30412483
Intron Length:
12297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGATAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTATATTTAATT
Flanking Amino Acid:
DLYAAESIIKDNLSQQICII
Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
77.9
36.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
74.6
0.55
1
70.1
39
Minor 5ss
44.3
-0.6
3.2
57.9
46.7
Minor BPS
72.9
0.8
1.4
85.75
34.2

Associated Gene:

Gene:
CRPPA
Ensembl Gene ID:
ENSAPLG00000007572
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036138
30387787 - 30463383
75597
ENSAPLT00000035255
30388696 - 30463383
74688
ENSAPLT00000022592
30335729 - 30463383
127655
ENSAPLT00000046314
30337951 - 30463383
125433
ENSAPLT00000007861
30337935 - 30463383
125449
ENSAPLT00000038881
30346196 - 30463383
117188