About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_30412530_30418943_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30412530 - 30418943
Intron Length:
6414

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATACA
5'SS Class:
strong_major
3'SS Sequence:
GTCTGTCCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
GCTGTGTTAAAT
Flanking Amino Acid:
LVEGTADLWKVTYKRDLYAA
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
83.1
28.6
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
73.3
0.52
0.9
70.2
36.5
Minor 5ss
35.4
-1.7
2.7
43.5
43.6
Minor BPS
47
-0.1
2.2
64.96
45.5

Associated Gene:

Gene:
CRPPA
Ensembl Gene ID:
ENSAPLG00000007572
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007861
30337935 - 30463383
125449
ENSAPLT00000038881
30346196 - 30463383
117188
ENSAPLT00000036138
30387787 - 30463383
75597
ENSAPLT00000035255
30388696 - 30463383
74688
ENSAPLT00000022592
30335729 - 30463383
127655
ENSAPLT00000046314
30337951 - 30463383
125433