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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_30436666_30456823_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30436666 - 30456823
Intron Length:
20158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTATGTTCT
5'SS Class:
major
3'SS Sequence:
TTTTGTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTGTTTCACA
Flanking Amino Acid:
KVVTAAKEHGAAGAIRPLVS
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
74.1
37.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88
0.86
0.7
83.5
31.6
Minor 5ss
48.5
-0.1
2.4
59.5
45
Minor BPS
59.4
0.29
2.2
78.6
38.6

Associated Gene:

Gene:
CRPPA
Ensembl Gene ID:
ENSAPLG00000007572
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035255
30388696 - 30463383
74688
ENSAPLT00000022592
30335729 - 30463383
127655
ENSAPLT00000046314
30337951 - 30463383
125433
ENSAPLT00000007861
30337935 - 30463383
125449
ENSAPLT00000038881
30346196 - 30463383
117188
ENSAPLT00000036138
30387787 - 30463383
75597