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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_30457104_30463243_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30457104 - 30463243
Intron Length:
6140

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACGAGG
5'SS Class:
major
3'SS Sequence:
TGTTTTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTCAT
U12 Branch Point Sequence:
GTAGCTTTATTT
Flanking Amino Acid:
LVSYAVRAMERVSWISDIIV
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.2
64.3
47.1
Major BPS
77
0.67
1.1
77.7
37.1
Major PPT
84.8
0.78
0.7
77.9
36.6
Minor 5ss
37.2
-1.4
3.1
48.8
47
Minor BPS
54
0.2
1.7
69.05
42.4

Associated Gene:

Gene:
CRPPA
Ensembl Gene ID:
ENSAPLG00000007572
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035255
30388696 - 30463383
74688
ENSAPLT00000022592
30335729 - 30463383
127655
ENSAPLT00000046314
30337951 - 30463383
125433
ENSAPLT00000007861
30337935 - 30463383
125449
ENSAPLT00000038881
30346196 - 30463383
117188
ENSAPLT00000036138
30387787 - 30463383
75597