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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_30477523_30477605_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30477523 - 30477605
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTTAGAAGT
5'SS Class:
major
3'SS Sequence:
GTTTGCTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAA
U12 Branch Point Sequence:
TCACCTGTAACC
Flanking Amino Acid:
RASKSSKHSTILTA*
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.2
70.4
39.9
Major BPS
65.6
0.39
0.9
55.4
32.7
Major PPT
83.3
0.75
0.9
76.3
37.8
Minor 5ss
33.3
-1.9
2.9
42.9
37.7
Minor BPS
52.1
0.04
2
64.27
41.4

Associated Gene:

Gene:
SOSTDC1
Ensembl Gene ID:
ENSAPLG00000007744
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008032
30476669 - 30480122
3454