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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_30521882_30525261_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30521882 - 30525261
Intron Length:
3380

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TTTCTTCCACCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATTAA
U12 Branch Point Sequence:
GTTACTTTATTT
Flanking Amino Acid:
IDVLVLYLAGQGLRSIPSLS
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
77.3
32.8
Major BPS
66.7
0.42
1
58.1
38.5
Major PPT
80.8
0.69
0.8
75
34.7
Minor 5ss
37.2
-1.4
2.8
47.9
41.8
Minor BPS
61.6
0.44
1.6
77.27
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007758
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008044
30508022 - 30539396
31375