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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_30527802_30529303_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30527802 - 30529303
Intron Length:
1502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAAATC
5'SS Class:
major
3'SS Sequence:
CATTTCATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTATTTTTCATT
Flanking Amino Acid:
LNDNEITDISGALKHLCALQ
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
72.5
37.2
Major BPS
100
1.24
0.5
100
0
Major PPT
81.4
0.71
0.8
78.2
34.5
Minor 5ss
36.3
-1.6
3.3
51.9
44.8
Minor BPS
61.3
0.44
1.7
79.64
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007758
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008044
30508022 - 30539396
31375