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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_30536898_30548070_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30536898 - 30548070
Intron Length:
11173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGACTA
5'SS Class:
major
3'SS Sequence:
TCTTCTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAACAT
U12 Branch Point Sequence:
TCTTCTTTCACA
Flanking Amino Acid:
LALNPDSPLEKDRQYCVEIQ
Intron Amino Acid Position:
441

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
0.9
70.6
35.2
Major BPS
63.2
0.33
1.1
69.6
35.7
Major PPT
87.4
0.84
0.7
83
25.5
Minor 5ss
31.8
-2.1
3.2
39.6
40
Minor BPS
69.7
0.62
1.7
78.6
38.6

Associated Gene:

Gene:
ANKMY2
Ensembl Gene ID:
ENSAPLG00000007875
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008191
30536857 - 30570215
33359