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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_30537181_30539230_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30537181 - 30539230
Intron Length:
2050

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
GTTCTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TTACATTTGATT
Flanking Amino Acid:
PDCEFGNHTNKVPFENPEDA
Intron Amino Acid Position:
217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
86.3
29
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
89
0.88
0.7
84.2
30.7
Minor 5ss
49.5
-0
2.5
68.8
35.6
Minor BPS
57.3
0.31
1.5
74.12
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007758
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008044
30508022 - 30539396
31375