About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_30553564_30554073_R

Intron Information:

Intron Rank:
6
Intron Class:
major_hybrid
Intron Phase:
2
Intron Coordinates:
30553564 - 30554073
Intron Length:
510

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TAAAAAAAAATAG|T
3'SS Class:
major_hybrid
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTGTTTTTAAAA
Flanking Amino Acid:
RDDKLDGFIKNLLKGRDKDG
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
47
-0.1
1
35.1
38.5
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
70.1
0.63
1.3
75.76
35.6

Associated Gene:

Gene:
ANKMY2
Ensembl Gene ID:
ENSAPLG00000007875
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033014
30547793 - 30570215
22423
ENSAPLT00000008191
30536857 - 30570215
33359