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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_30594022_30599656_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30594022 - 30599656
Intron Length:
5635

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAGGTTAA
5'SS Class:
major
3'SS Sequence:
CTGTCTGTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTCAA
U12 Branch Point Sequence:
TTTTTCTTCTTC
Flanking Amino Acid:
TGQRFKTRKRDEKEKFEPTV
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1.1
71.1
37.5
Major BPS
63.3
0.33
1.2
67
39.8
Major PPT
77.4
0.62
0.9
68.8
42
Minor 5ss
37.7
-1.4
3.1
39.8
46.2
Minor BPS
44.7
-0.4
3.6
73.26
38.6

Associated Gene:

Gene:
BZW2
Ensembl Gene ID:
ENSAPLG00000008006
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032054
30593957 - 30627055
33099
ENSAPLT00000027403
30593957 - 30626828
32872
ENSAPLT00000023624
30593957 - 30621862
27906
ENSAPLT00000008349
30593957 - 30628572
34616