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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_30599834_30600975_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30599834 - 30600975
Intron Length:
1142

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTGTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TTTACTAAATCT
Flanking Amino Acid:
FDILVAGSMLAPGGTRIDDN
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
82.3
32.2
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
81.9
0.72
0.9
81.2
36.5
Minor 5ss
40.5
-1.1
2.8
53
44.2
Minor BPS
46.5
-0.1
2.1
73.39
43.5

Associated Gene:

Gene:
BZW2
Ensembl Gene ID:
ENSAPLG00000008006
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032054
30593957 - 30627055
33099
ENSAPLT00000027403
30593957 - 30626828
32872
ENSAPLT00000023624
30593957 - 30621862
27906
ENSAPLT00000008349
30593957 - 30628572
34616