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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_30609529_30613209_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30609529 - 30613209
Intron Length:
3681

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
ATTTTCTCAAAC
Flanking Amino Acid:
SLFTDNIVKEGIAASFAVKL
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
1.1
82.3
32.2
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
77.7
0.62
0.9
74.6
34
Minor 5ss
51.2
0.04
2.5
70.2
40.4
Minor BPS
63.8
0.41
1.6
74.33
35.7

Associated Gene:

Gene:
BZW2
Ensembl Gene ID:
ENSAPLG00000008006
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027403
30593957 - 30626828
32872
ENSAPLT00000023624
30593957 - 30621862
27906
ENSAPLT00000008349
30593957 - 30628572
34616
ENSAPLT00000032054
30593957 - 30627055
33099