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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_30613320_30615175_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30613320 - 30615175
Intron Length:
1856

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
CCTGTCTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
GTTTATGTAACA
Flanking Amino Acid:
RKANLDKRLLELFPANRQNV
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
76.2
32.6
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
79
0.65
0.8
76.7
32
Minor 5ss
37.9
-1.4
2.7
45.5
37.1
Minor BPS
54.5
0.14
2.2
72.93
38.9

Associated Gene:

Gene:
BZW2
Ensembl Gene ID:
ENSAPLG00000008006
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008349
30593957 - 30628572
34616
ENSAPLT00000032054
30593957 - 30627055
33099
ENSAPLT00000027403
30593957 - 30626828
32872
ENSAPLT00000023624
30593957 - 30621862
27906