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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_30615347_30615729_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30615347 - 30615729
Intron Length:
383

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCATGCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TGTTGCTCAACA
Flanking Amino Acid:
RLSQECPIKEVVLYVKEEMK
Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
75.8
39.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
78.6
0.64
0.9
69.8
41.2
Minor 5ss
33.3
-1.9
3.3
48.8
47
Minor BPS
62.2
0.38
2
76.68
40.2

Associated Gene:

Gene:
BZW2
Ensembl Gene ID:
ENSAPLG00000008006
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023624
30593957 - 30621862
27906
ENSAPLT00000008349
30593957 - 30628572
34616
ENSAPLT00000032054
30593957 - 30627055
33099
ENSAPLT00000027403
30593957 - 30626828
32872