About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_30626829_30628543_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30626829 - 30628543
Intron Length:
1715

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTAAAT
U12 Branch Point Sequence:
ACTACATTAAAT
Flanking Amino Acid:
FVEWLQNAEEESESEGEEN*
Intron Amino Acid Position:
411

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
84.2
33.4
Major BPS
73.5
0.58
1
79.3
29.4
Major PPT
84.4
0.77
0.7
77.4
31.4
Minor 5ss
44.3
-0.6
3.2
65.5
45.8
Minor BPS
57.8
0.32
1.8
74.12
41.9

Associated Gene:

Gene:
BZW2
Ensembl Gene ID:
ENSAPLG00000008006
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008349
30593957 - 30628572
34616