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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_30648920_30660679_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30648920 - 30660679
Intron Length:
11760

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGCGGCGC
5'SS Class:
major
3'SS Sequence:
CTCTTCCCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TGCAGACTAACT
Flanking Amino Acid:
CLCALNLLYTLVSLLLIGIA
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.5
0.32
1.1
46.3
43.9
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
82
0.72
0.7
73.4
31.6
Minor 5ss
25.1
-2.9
3.3
32.8
42.4
Minor BPS
43.3
-0.4
2.3
63.64
45.7

Associated Gene:

Gene:
TSPAN13
Ensembl Gene ID:
ENSAPLG00000017184
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031219
30648857 - 30665975
17119