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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_30660848_30662120_F

Intron Information:

Intron Rank:
2
Intron Class:
minor
Intron Phase:
0
Intron Coordinates:
30660848 - 30662120
Intron Length:
1273

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTATCCTTC
5'SS Class:
strong_minor
3'SS Sequence:
CTACTACTTTCAG|T
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
GTATCTTTAACT
Flanking Amino Acid:
VKHHQVLLFFYMIILLLVFI
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
49.8
-0
1.2
51.5
40.4
Major BPS
83
0.82
0.8
82
24.9
Major PPT
77.6
0.62
0.9
73.9
35.5
Minor 5ss
94
1.48
0.8
90.4
20.7
Minor BPS
83
1.11
1
89.81
33.9

Associated Gene:

Gene:
TSPAN13
Ensembl Gene ID:
ENSAPLG00000017184
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031219
30648857 - 30665975
17119