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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_30662202_30663145_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30662202 - 30663145
Intron Length:
944

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTCTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
GATTAATTAATA
Flanking Amino Acid:
ACLALNKEQQSQLLEVGWNN
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
83
0.82
0.8
82
24.9
Major PPT
78.8
0.65
0.9
73.9
36.8
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
57.2
0.22
1.8
68.13
37.5

Associated Gene:

Gene:
TSPAN13
Ensembl Gene ID:
ENSAPLG00000017184
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031219
30648857 - 30665975
17119