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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_30663706_30664900_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30663706 - 30664900
Intron Length:
1195

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
CTCTGCTTAATA
Flanking Amino Acid:
GIGLFFSFTEILGVWLTYRY
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.7
81.8
38.5
Major BPS
80
0.75
1
78.6
31
Major PPT
94.5
1
0.5
93.1
16
Minor 5ss
35.1
-1.7
2.7
42.5
44.3
Minor BPS
63.7
0.42
1.8
70.44
42.7

Associated Gene:

Gene:
TSPAN13
Ensembl Gene ID:
ENSAPLG00000017184
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031219
30648857 - 30665975
17119